.. highlight:: rest

.. _citations_module:

The :mod:`ihm.citations` Python module
======================================

.. automodule:: ihm.citations

.. data:: imp

   The Integrative Modeling Platform (IMP).

.. data:: pmi

   The PMI module of the Integrative Modeling Platform (IMP).

.. data:: modeller

   MODELLER, comparative modeling by satisfaction of spatial restraints.

.. data:: psipred

   PSIPRED, protein secondary structure prediction based on position-specific
   scoring matrices.

.. data:: disopred

   DISOPRED, disordered region prediction.

.. data:: hhpred

   HHpred, protein homology detection and structure prediction.

.. data:: relion

   RELION, a Bayesian approach for cryo-EM structure determination.

.. data:: phyre2

   Phyre2, a web portal for protein modeling, prediction and analysis.

.. data:: swiss_model

   SWISS-MODEL: homology modeling of protein structures and complexes.

.. data:: alphafold2

   AlphaFold: ab-initio modeling of protein structures.

.. data:: colabfold

   ColabFold: accessible AlphaFold pipeline.

.. data:: qmeandisco

   QMEANDisCo: model quality estimation with distance constraints.

.. data:: mmseqs2

   MMseqs2: app for fast, interactive sequence searches.
